PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02476.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 211aa    MW: 22961.6 Da    PI: 9.8822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02476.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.3e-1666114255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Jcr4S02476.30  66 IYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYQTPEMAAAAYDVAALALKG 114
                    69***6..678*********843...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-965114IPR001471AP2/ERF domain
CDDcd000182.13E-1765124No hitNo description
Gene3DG3DSA:3.30.730.106.5E-2766123IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1866124IPR016177DNA-binding domain
PROSITE profilePS5103220.09966122IPR001471AP2/ERF domain
SMARTSM003806.2E-3066128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MADPNIHNHT GLPQINQTHP PFDPTSPPKP NPLDPFVSWS NSTNPGQNPP KSSMATTSAT  60
TKRHPIYRGI RSRSGKWVSE IREPRKTTRI WLGTYQTPEM AAAAYDVAAL ALKGGDAVLN  120
FPNSVGSYPV PASSSPTDIR NAAAAAAAFK NAEMNQRPLI LQARSDHELS ANFTASDQEF  180
VDEEALFRYA QFAGGYGRRN AAFAAQNNLL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1367127668ATERF1
3gcc_A3e-1367127668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087005.11e-92PREDICTED: ethylene-responsive transcription factor ERF026
TrEMBLA0A067JRQ41e-136A0A067JRQ4_JATCU; Uncharacterized protein
STRINGPOPTR_0003s12120.11e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-30ERF family protein